| Biology WorkBench
|
Gene/Protein annotation and sequence analysis
portal with file management accessing 30 databases and 66 tools |
| CE-MC |
Multiple Protein Structure Alignment by Monte Carlo Methods |
| Combinatorial Extension
(CE) |
3-D Protein Structure Comparison and Alignment, with all-to-all
comparison of known protein structures |
| Compound Likeness Method
(CL) |
Searches the complete structure database for structural similarities
to a known polypeptide chain or polypeptide chain fragment to
find 3-D similarities in protein structures |
| CMS Molecular Biology
Resource |
Compendium of electronic and Internet-accessible tools for
molecular biology, biotechnology, biological modeling, and biochemistry. |
| Dicty WorkBench |
Dictyostelium discoideum genome annotation and analysis
portal |
| EULER: DNA Fragment
Assembly Software |
A powerful DNA fragment assembly tool that uses an Eulerian
path approach instead of the classical "overlap - layout
- consensus" paradigm used in currently available assembly
tools. |
| SDSC-1 Protein Homology
Modeling Server |
Protein structure prediction tool demonstrated at CASP4, the
Community-wide Experiment on Critical Assessment of Techniques
for Protein Structure Prediction |
| Family Pairwise Search |
Search a library of protein families with a protein sequence
you provide. |
| GAMESS |
General Atomic Molecular Electronic Structure Systems program
for ab initio quantum chemistry |
| MEME/MAST |
Discovers motifs in groups of related DNA or protein sequences
and searches sequence databases using motifs. |
| Meta-MEME |
A software toolkit for building and using Motif-based hidden
Markov models of DNA and proteins. |
| Molecular Information Agent |
Interface to a cross-reference search and retrieval system
50 biological databases for query protein or DNA sequence. |
| Net Center for Plant
Genomics |
Plant genomics-specific web search database and Knockout Search,
a BLAST search against several public insertion databases producing
merged results. |
| Protein
Explorer |
Visualization of the three-dimensional structures of protein,
DNA, and RNA macromolecules, and their interactions with ligands,
inhibitors, and drugs. |
| SledgeHMMER |
This web server is designed to carry out batch searching of
Pfam database using the 'hmmpfam' program. The 'hmmpfam' program
used in this web server is optimized to run several times faster
than the original program from the 2.3.2 release of HMMER. SledgeHMMER.pdf |
| Structure Alignment
Tools (SAT) |
Interactive numerical tools for structure-based protein sequence
alignment |
SDSC — UC San
Diego, MC 0505 — 9500 Gilman Drive — La Jolla, CA 92093-0505