| BioEditor |
Windows program used to prepare and present
protein structure annotations containing formatted text, graphics,
sequence data, and interactive molecular views |
| DOT |
Package for multiprocessor systems to study molecular interactions
using geometric fit information instead of closest distance
between the molecules, and uses full Poisson-Boltzmann electrostatic
potentials instead of the Coulombic electrostatic model |
| CIPRes |
Java based platform for performing phylogenetic
analysis |
| FADE and PADRE |
Atomic density methods for molecular modeling of molecular
shape and shape complementarity for UNIX systems. |
| Flex |
Portable molecular graphics program that interactively displays
3D ball-and-stick models on workstations running the Xwindows
system |
| Ligand
Explorer (NEW!) |
Java application for rapid inspections of protein-ligand interactions
using protein structure files. |
| MICE |
Java application producing high quality, interactive visualization
of molecular scenes |
| Molecular Biology Toolkit
(NEW!) |
Java-based protein visualization and analysis tools for efficiently
loading, managing and manipulating protein structure and sequence
data and a set of graphical 3D and 2D visualization components |
| MMQL |
C++ class library, for querying features of biological macromolecules |
| PDBlib |
class library for representing the 3-dimensional structure
of biological macromolecules |
| QuickPDB |
Java applet for viewing PDB structures looking for interactions
between sequence and structure |
| Shape |
Package of two C++ programs used to analyze structure and
chemistry at the molecular surface |
| WPDB |
Microsoft Windows (95 and NT) based program to interrogate
the 3-D structure of biological macromolecules |
| XtalView |
Package for solving a macromolecular crystal structure by
isomorphous replacement, including building the molecular model |
SDSC — UC San
Diego, MC 0505 — 9500 Gilman Drive — La Jolla, CA 92093-0505