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National Laboratory for Advanced Data Research Data Technologies Science & Other Applications Programs (SOAP) SDSC/Cal-(IT)2 Synthesis Center


BIOLOGICAL DATABASES

Apoptosis-DB Classification of protein families and domains involved in apoptosis (cell death and aging)
CKAAP DB Analysis of Conserved Key Amino Acid Positions in protein structures, with implications for structural integrity, functional site or protein engineering studies using structural alignment algorithms.
Encyclopedia of Life (EOL) Domain based structure and functional annotation of proteome data from published genomes
Molecule Pages Comprehensive database of the Alliance for Cellular Signalling with published qualitative and quantitative information for proteins involved in signal transduction
Proteins of Arabidopsis Thaliana (PAT) Prediction of the three dimensional structures of plant proteins
Protein Data Bank (PDB) The worldwide repository for the processing and distribution of 3-D biological macromolecular structure data
PDB Obsolete Entry Archive  Archive used to locate and analyze obsolete PDB entries
Protein Kinase Resource (PKR) A compendium of information on the protein kinase family of enzymes integrating cellular and molecular data
Nucleic Acid Database (NDB)  Mirror of DNA and RNA structure information resource at Rutgers University
PlantsP      Functional genomics resource for protein kinases and phosphatases of the plant phosphorylation.
PlantsT   Functional genomics resource for plant transporters controlling the uptake and translocation of mineral nutrients and toxic metals in plants.
PlantsU  A functional genomics database for the Ubiquitin/26S proteasome proteolytic pathway in plants
The Mitoproteome Database  An annotated mitochondrial protein resource of mitochondrial- and nuclear-encoded human mitochondrial proteins.

The Transporter Classification Database (TCDB)

 A comprehensive IUBMB approved classification system for membrane transport proteins incorporating phylogenentic information
TreeBASE A relational database of information on phylogenetic relationships from published phylogenetic trees and data matrices.

 


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